最近发表在Ecology上的一篇文章审查了2018-2022年期间在九本生态学相关杂志上发表的文章提供的原始数据和代码。这些数据和代码用于预测物种的分布和丰度。作者对这些文章提供的代码的重现性进行了验证，汇总了提供可重复性代码的文章清单。小编通过查阅附件，并进一步进行了筛选，汇总了具有较高可信度代码的文章标题。相信对于想要学习R语言或应用R语言预测物种分布和丰度的读者能有所帮助。大家可查阅感兴趣的文章，并下载文章提供的原始数据和代码通过重新运行其代码学习相关建模过程。文章标题清单如下：
Developing cost-effective monitoring protocols for track-surveys: An empirical assessment using a Canada lynx Lynx canadensis dataset spanning 16 years
Repeated burning undermines the value of regenerating cattle pastures for tropical forest birds
Overlooked sexual segregation of habitats exposes female migratory landbirds to threats
Long-term drivers of persistence and colonization dynamics in spatially structured amphibian populations
Optimal sampling design for spatial capture-recapture
Modeling spatiotemporal abundance and movement dynamics using an integrated spatial capture-recapture movement model
Assessing the effect of density on population growth when modeling individual encounter data
Using machine learning to model nontraditional spatial dependence in occupancy data
What can occupancy models gain from time-to-detection data?
Model selection in occupancy models: Inference versus prediction.
Identifying occupancy model inadequacies: can residuals separately assess detection and presence?
Integrating distance sampling and presence-only data to estimate species abundance
Next-generation serology: integrating cross-sectional and capture-recapture approaches to infer disease dynamics
Analyzing community structure subject to incomplete sampling: hierarchical community model vs. canonical ordinations
Occupancy data improves parameter precision in spatial capture-recapture models
Estimability of migration survival rates from integrated breeding and winter capture-recapture data
Zero-inflated count distributions for capture-mark-reencounter data
Multi-surveyor capture-mark-recapture as a powerful tool for butterfly population monitoring in the pre-imaginal stage
Spatial capture-recapture with multiple noninvasive marks: An application to camera-trapping data of the European wildcat (Felis silvestris) using R package multimark
An assessment of sampling designs using SCR analyses to estimate abundance of boreal caribou
Bayesian model selection for spatial capture-recapture models
Inferring predator-prey interactions from camera traps: A Bayesian co-abundance modeling approach
Abundance of montane salamanders over an elevational gradient
Demographic responses to climate change in a threatened Arctic species
Influence of damming on anuran species richness in riparian areas: A test of the serial discontinuity concept
Hierarchical distance sampling to estimate population sizes of common lizards across a desert ecoregion
How do terrestrial wildlife communities respond to small-scale Acacia plantations embedded in harvested tropical forest?
Using visual encounter data to improve capture-recapture abundance estimates
Estimating the survival of unobservable life stages for a declining frog with a complex life history
Removal pattern mitigates negative, short-term effects of stepwise Russian olive eradication on breeding birds
Disentangling effects of invasive species and habitat while accounting for observer error in a long-term amphibian study
Wetland occupancy by duck broods in cropland-dominated landscapes of the United States Prairie Pothole Region
Addressing Temporal Variability in Bird Calling with Design and Estimation: A Northern Bobwhite Example
R2ucare: An r package to perform goodness-of-fit tests for capture-recapture models
Population closure and the bias-precision trade-off in spatial capture-recapture
Estimating recruitment from capture-recapture data by modelling spatio-temporal variation in birth and age-specific survival rates
Misidentification errors in reencounters result in biased estimates of survival probability from CJS models: Evidence and a solution using the robust design
Using partial aggregation in spatial capture recapture
msocc: Fit and analyse computationally efficient multi-scale occupancy models inr
Multispecies site occupancy modelling and study design for spatially replicated environmental DNA metabarcoding
Accounting for uncertainty in duplicate identification and group size judgements in mark-recapture distance sampling
Colonization and extinction rates estimated from temporal dynamics of ecological communities: The island r package
Simulation-based validation of spatial capture-recapture models: A case study using mountain lions
Traditional trapping methods outperform eDNA sampling for introduced semi-aquatic snakes
Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
High carnivore population density highlights the conservation value of industrialised sites
The effects of wildfire severity and pyrodiversity on bat occupancy and diversity in fire-suppressed forests
